refactor: update import statements to use .js extensions

- Changed all import statements across the project to include the .js extension for consistency and to comply with ES module standards.
- Updated imports in various files including bootstrap.ts, shutdown.ts, config.ts, and many others.
- Ensured that all related modules and types are correctly imported with the new extension.

src/database/migrate.ts

@@ -3,9 +3,9 @@ import Database from "better-sqlite3";
 import { drizzle as drizzleSqlite } from "drizzle-orm/better-sqlite3";
 import { migrate as migrateSqlite } from "drizzle-orm/better-sqlite3/migrator";
 import { migrate as migratePostgres } from "drizzle-orm/node-postgres/migrator";
-import { config } from "../config";
-import { createChildLogger } from "../logger";
-import { closeDatabase, initializeDatabase } from "./drizzle";
+import { config } from "../config.js";
+import { createChildLogger } from "../logger.js";
+import { closeDatabase, initializeDatabase } from "./drizzle.js";
 
 const logger = createChildLogger("migrate");