feat: update README and documentation for new tools and features

- Updated README.md to reflect the addition of 3 new built-in tools, bringing the total to 37.
- Revised architecture documentation to indicate the increase in tool count.
- Enhanced backend documentation with updated line counts for various modules.
- Modified data documentation to change edit log format from JSON to JSONL.
- Updated dependencies documentation to reflect version upgrades for several crates.
- Improved prompts for auto-reviewer, division implementer, planner, tester, and quality reviewer to enforce stricter coding standards regarding linter bypasses.
- Refactored code in various modules to improve clarity and performance, including updates to error handling and tool execution logic.
- Added comprehensive tests for IPC frame serialization and deserialization.

src/tool/mod.rs

@@ -141,7 +141,7 @@ impl ToolCtxBuilder {
 
 /// Construct one instance of every built-in tool, in the fixed order exposed to the LLM.
 ///
-/// Return: boxed trait objects for all 28 tools (fs, search, bash, git, memory, plan,
+/// Return: boxed trait objects for all 37 tools (fs, search, bash, git, memory, plan,
 /// workflow, utility).
 pub fn all_tools() -> Vec<Box<dyn Tool>> {
     vec![

src/tool/workflow.rs

@@ -206,7 +206,7 @@ impl Tool for CompanyPipeline {
                     let specs = v.as_array().map(|arr| {
                         arr.iter().filter_map(|item| {
                             let pair = item.as_array()?;
-                            let label = pair.get(0)?.as_str()?.to_string();
+                            let label = pair.first()?.as_str()?.to_string();
                             let focus = pair.get(1)?.as_str()?.to_string();
                             Some((label, focus))
                         }).collect()
@@ -225,7 +225,7 @@ impl Tool for CompanyPipeline {
                     &ctx.workspaces,
                     ctx.turn_events.as_ref(),
                     &no_abort,
-                    custom_specialists,
+                    &custom_specialists,
                 )
             }
             _ => {
@@ -235,7 +235,7 @@ impl Tool for CompanyPipeline {
                     &ctx.workspaces,
                     ctx.turn_events.as_ref(),
                     &no_abort,
-                    custom_specialists,
+                    &custom_specialists,
                 )
             }
         }
@@ -273,7 +273,7 @@ impl Tool for ReadFindings {
                     .map(|(i, f)| format!("{}. {}", i + 1, f))
                     .collect::<Vec<_>>()
                     .join("\n");
-                Ok(format!("Findings in this workflow run:\n{}", formatted))
+                Ok(format!("Findings in this workflow run:\n{formatted}"))
             }
         } else {
             Ok("No findings database available (called outside a workflow run).".to_string())