- Added module-level documentation for memory tools (`remember`, `recall`, `forget`) to clarify their purpose.
- Improved documentation in `recall.rs` and `remember.rs` to describe the functionality and flow of memory entry operations.
- Updated `mod.rs` to include descriptions for the tool trait and execution context.
- Enhanced `plan.rs` with detailed comments on plan-mode signaling tools.
- Documented text search tools in `search.rs` to explain their functionality.
- Improved sequential-thinking tool documentation in `seqthink.rs`.
- Added safety filter documentation in `shell_filter` for credential and git operations.
- Enhanced utility tools documentation, including `cd`, `dir_cache_update`, and `todowrite`.
- Improved rendering documentation in view modules (`chat`, `markdown`, `status`, `workflow`) to clarify rendering flows and purposes.
- Updated `scroll_up` and `scroll_down` methods to take an `amount` parameter for more flexible scrolling.
- Removed the `AgentMode` enum and related methods from the types module to simplify state management.
- Modified `AppStateRest` to remove the `mode` field and adjusted related logic.
- Enhanced `run_subagent` to build tool definitions and handle API key resolution from configuration.
- Updated command parsing to reflect changes in login handling.
- Removed onboarding overlays and related logic from input handling and rendering.
- Improved status bar to reflect connection status and agent readiness.
- Adjusted workflow panel rendering to simplify phase status display.
- Refactored edit log initialization to load from disk if available.
- Updated settings structure to use a HashMap for API keys.
- Enhanced error handling in LlmClient for authentication issues.